| FK Sarajevo/Spartak Trnava | - | FC Sestaponi/Helsingborgs IF |
| Fredrikstad FK | - | Lech Posen |
| FC Differdingen/HNK Rijeka | - | Metalist Charkow |
| Naftan Nawapolazk/KAA Gent | - | AS Rom |
| FC Vaslui | - | Omonia Nikosia/HB Tórshavn |
| Aalborg BK/Slavija Sarajevo | - | MFK Kosice |
| IFK Göteborg | - | Hapoel Tel Aviv |
| PSV Eindhoven | - | Tscherno More Warna/Iskra-Stali Ribnita |
| Metalurg Donezk/MTZ/RIPA Minsk | - | Interblock Ljubljana |
| Vålerenga Oslo | - | PAOK Saloniki |
| APOP Kinyras Peyias/CYP | - | Rapid Wien/Vllaznia Shkoder |
| FC Honka Espoo/Bangor City | - | Rosenborg Trondheim/Qarabag Agdam Baku |
| FC Falkirk/FC Vaduz | - | Slovan Liberec |
| St Patrick's Athletic/FC Valletta | - | Krylja Sowetow Samara |
| Suduva Marijampole/Randers FC | - | Hamburger SV |
| Dinamo Misnk/Troms IL | - | Milano Kumanovo/Slaven Koprivnica |
| Brøndby Kopenhagen/Flora Tallinn | - | Legia Warschau/Olimpi Rustawi |
| Vojvodina Novi Sad | - | Austria Wien |
| ZSKA Sofia | - | Skonto Riga/Derry City |
| Steaua Bukarest/Ujpest Budapest | - | Flamurtari Vlore/FC Motherwell |
| MSk Zilina/Dacia Chisinau | - | Hajduk Split |
| Sporting Braga | - | IF Elfsborg/Haladas Szombathely |
| FC Aberdeen | - | Sigma Olmütz/Fram Reykjavik |
| Crusaders Belfast/Rabotnicki Skopje | - | Odense BK |
| FK Sevojno/FBK Kaunas | - | OSC Lille |
| Anorthosis Famagusta/OFK Petrovac | - | Sturm Graz/Siroki Brijeg |
| Fenerbahce Istanbul | - | Honved Budapest |
| Bnei Yehuda Tel Aviv/FC Dinaburg | - | Zimbru Chisinau/Paços Ferreira |
| FC Brügge | - | ND Gorica/FC Lahti |
| Athletic Bilbao | - | Young Boys Bern |
| KR Reykjavik/AE Larisa | - | FC Basel/FC Santa Coloma |
| Tobyl Qostanai/Galatasaray Istanbul | - | Sliema Wanderers/Maccabi Netanya |
| Liepajas Metalurgs/Dinamo Tiflis | - | Rudar Velenje/Roter Stern Belgrad |
| AC Juvenes/Dogana/Polonia Warschau | - | NAC Breda/Gandsassar Kapan |
| Vetra Vilnius/HJK Helsinki | - | FC Fulham |
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